Isolation of identical nitrilase genes from multiple bacterial strains and real-time PCR detection of the genes from soils provides evidence of horizontal gene transfer

Coffey, Lee and Clarke, Adrienne and Duggan, Patrick and Tambling, Karen and Horgan, Serenia and Dowling, David and O'Reilly, Catherine (2009) Isolation of identical nitrilase genes from multiple bacterial strains and real-time PCR detection of the genes from soils provides evidence of horizontal gene transfer. Archives of Microbiology, 191 (10). pp. 761-771. ISSN 0302-8933

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Abstract

Bacterial enzymes capable of nitrile hydrolysis have significant industrial potential. Microbacterium sp. AJ115, Rhodococcus erythropolis AJ270 and AJ300 were isolated from the same location in England and harbour identical nitrile hydratase/amidase gene clusters. Strain AJ270 has been well studied due to its nitrile hydratase and amidase activity. R. erythropolis ITCBP was isolated from Denmark and carries a very similar nitrile hydratase/amidase gene cluster. In this study, an identical nitrilase gene (nit1) was isolated from the four strains, and the nitrilase from strain AJ270 cloned and expressed in Escherichia coli. Analysis of the recombinant nitrilase has shown it to be functional with activity demonstrated towards phenylacetonitrile. A real-time PCR TaqMan ® assay was developed that allowed nit1 detection directly from soil enrichment cultures without DNA extraction, with nit1 detected in all samples tested. Real-time PCR screening of isolates from these soils resulted in the isolation of nit1 and also very similar nitrilase gene nit2 from a number of Burkholderia sp. The genes nit1 and nit2 have also been detected in many bacteria of different genera but are unstable in these isolates. It is likely that the genes were acquired by horizontal gene transfer and may be widespread in the environment.

Item Type:	Article
Additional Information:	Funding Information: Acknowledgments This work has been funded by the Irish Research Council for Science, Engineering and Technology (EMBARK Initiative), Technological Sector Research (STRANDIII) and an SGM Summer Vocation Studentship.
Uncontrolled Keywords:	/dk/atira/pure/subjectarea/asjc/2400/2404
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Depositing User:	Admin SSL
Date Deposited:	19 Oct 2022 23:04
Last Modified:	07 Jun 2023 18:42
URI:	http://repository-testing.wit.ie/id/eprint/3886

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